2YOQ Apoptosis date Oct 26, 2012
title Structure Of Fam3b Pander E30 Construct
authors P.Johansson, J.Bernstrom, T.Gorman, L.Oster, S.Backstrom, F.Schwe B.Xu, Y.Xue, L.Holmberg Schiavone
compound source
Molecule: Protein Fam3b
Chain: A, B, C
Synonym: Cytokine-Like Protein 2-21, Pancreatic-Derived Fac Pander;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 31
R_factor 0.1583 R_Free 0.1897
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.540 86.540 96.280 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • cytokine activity


    • Primary referenceFAM3B PANDER and FAM3C ILEI Represent a Distinct Class of Signaling Molecules with a Non-Cytokine-like Fold., Johansson P, Bernstrom J, Gorman T, Oster L, Backstrom S, Schweikart F, Xu B, Xue Y, Schiavone LH, Structure. 2013 Jan 15. pii: S0969-2126(12)00464-9. doi:, 10.1016/j.str.2012.12.009. PMID:23333428
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (2yoq.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (2yoq.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (2yoq.pdb3.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2YOQ
  • CSU: Contacts of Structural Units for 2YOQ
  • Structure Factors (642 Kb)
  • Retrieve 2YOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YOQ from S2C, [Save to disk]
  • Re-refined 2yoq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YOQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YOQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yoq_C] [2yoq_B] [2yoq] [2yoq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2YOQ
  • Community annotation for 2YOQ at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science