2YPG Viral Protein date Oct 30, 2012
title Haemagglutinin Of 1968 Human H3n2 Virus In Complex With Huma Analogue Lstc
authors J.Liu, X.Xiong, L.F.Haire, Y.P.Lin, S.A.Wharton, S.R.Martin, P.J.C S.G.Vachieri, E.Christodoulou, P.A.Walker, J.J.Skehel, S.J.Gamb A.J.Hay, R.S.Daniels, J.W.Mccauley
compound source
Molecule: Hemagglutinin Ha1 Chain
Chain: A, C, E
Synonym: Haemagglutinin Ha1
 Organism_scientific: Influenza A Virus (Ax-31(H3n2))
Organism_taxid: 132504

Molecule: Hemagglutinin Ha2 Chain
Chain: B, D, F
Fragment: Ha2 Of Bromelain Released Ectodomain, Residues 34
Synonym: Haemagglutinin Ha2
Organism_scientific: Influenza A Virus (Ax-31(H3n2))
Organism_taxid: 132504
symmetry Space Group: P 41
R_factor 0.177 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.767 160.767 177.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.85 Å
ligand BGC, BMA, FLC, FUL, GAL, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceEvolution of the receptor binding properties of the influenza A(H3N2) hemagglutinin., Lin YP, Xiong X, Wharton SA, Martin SR, Coombs PJ, Vachieri SG, Christodoulou E, Walker PA, Liu J, Skehel JJ, Gamblin SJ, Hay AJ, Daniels RS, McCauley JW, Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21474-9. doi:, 10.1073/pnas.1218841110. Epub 2012 Dec 10. PMID:23236176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (2ypg.pdb1.gz) 493 Kb
  • LPC: Ligand-Protein Contacts for 2YPG
  • CSU: Contacts of Structural Units for 2YPG
  • Structure Factors (4070 Kb)
  • Retrieve 2YPG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YPG from S2C, [Save to disk]
  • Re-refined 2ypg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YPG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YPG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YPG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ypg_C] [2ypg_D] [2ypg] [2ypg_E] [2ypg_A] [2ypg_B] [2ypg_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2YPG
  • Community annotation for 2YPG at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science