2YQ6	Apoptosis	date	Nov 06, 2012
title	Structure Of Bcl-Xl Bound To Bimsahb
authors	B.J.Smith, P.E.Czabotar
compound		source
Molecule: Bcl-2-Like Protein 1 Chain: A Fragment: Residues 1-26,83-209 Synonym: Bcl-Xl, Bcl2-L-1, Apoptosis Regulator Bcl-X Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_vector: Pgex-6p3
Molecule: Bim Beta 5 Chain: B Fragment: Bh3 Domain, Residues 14-31 Synonym: Bim Engineered: Yes Mutation: Yes Other_details: Covalent Linkage Between Side Chains Of Non- Amino Acids At Positions 154 And 158, Joined Through A Meta Reaction.		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free 0.201
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.736 35.336 61.412 90.00 100.61 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	GOL, MK8, NH2	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Stabilizing the pro-apoptotic BimBH3 helix (BimSAHB) does not necessarily enhance affinity or biological activity., Okamoto T, Zobel K, Fedorova A, Quan C, Yang H, Fairbrother WJ, Huang DC, Smith BJ, Deshayes K, Czabotar PE, ACS Chem Biol. 2012 Nov 14. PMID:23151250

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk] Biological Unit Coordinates (2yq6.pdb1.gz) 111 Kb LPC: Ligand-Protein Contacts for 2YQ6 CSU: Contacts of Structural Units for 2YQ6 Structure Factors (174 Kb) Retrieve 2YQ6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YQ6 from S2C, [Save to disk] Re-refined 2yq6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YQ6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YQ6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YQ6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yq6_A] [2yq6] [2yq6_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2YQ6: [BCL] [BH4 ] by SMART

Other resources with information on 2YQ6

Community annotation for 2YQ6 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---