2YT4	Rna Binding Protein	date	Apr 05, 2007
title	Crystal Structure Of Human Dgcr8 Core
authors	Y.Cho, S.Y.Sohn
compound		source
Molecule: Protein Dgcr8 Chain: A Fragment: Two Dsrbds And C-Terminal Domain Synonym: Digeorge Syndrome Critical Region 8, Digeorge Synd Chromosomal Region; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: Hek293t Gene: Dgcr8, C22orf12, Dgcrk6 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.214 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.511 59.985 70.921 90.00 106.86 90.00
method	X-Ray Diffraction	resolution	2.60 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of human DGCR8 core., Sohn SY, Bae WJ, Kim JJ, Yeom KH, Kim VN, Cho Y, Nat Struct Mol Biol. 2007 Sep;14(9):847-53. Epub 2007 Aug 19. PMID:17704815

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk] Biological Unit Coordinates (2yt4.pdb1.gz) 33 Kb CSU: Contacts of Structural Units for 2YT4 Likely Quarternary Molecular Structure file(s) for 2YT4 Structure Factors (48 Kb) Retrieve 2YT4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YT4 from S2C, [Save to disk] Re-refined 2yt4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YT4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YT4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YT4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yt4_A] [2yt4] SWISS-PROT database: [Q8WYQ5] Domain organization of [DGCR8_HUMAN] by SWISSPFAM Domain found in 2YT4: [DSRM ] by SMART

Other resources with information on 2YT4

Community annotation for 2YT4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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