2YTB Metal Binding Protein date Apr 05, 2007
title Solution Structure Of C2h2 Type Zinc Finger Domain 5 In Zinc Protein 32
authors N.Kasahara, K.Tsuda, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirou S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Zinc Finger Protein 32
Chain: A
Fragment: Zinc-Finger Motif
Synonym: Zinc Finger Protein Kox30, C2h2-546
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Znf32, Kox30
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061204-06
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (2ytb.pdb1.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 2YTB
  • CSU: Contacts of Structural Units for 2YTB
  • Retrieve 2YTB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YTB from S2C, [Save to disk]
    • View 2YTB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YTB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YTB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ytb_A] [2ytb]
  • SWISS-PROT database: [P17041]
  • Domain organization of [ZNF32_HUMAN] by SWISSPFAM
  • Domain found in 2YTB: [ZnF_C2H2 ] by SMART
    • Other resources with information on 2YTB
  • Community annotation for 2YTB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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