2YUF Transcription date Apr 06, 2007
title Solution Structure Of The Ncd2 Domain In Human Transcription Repressor Nab1 Protein
authors K.Saito, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteo Initiative (Rsgi)
compound source
Molecule: Ngfi-A-Binding Protein 1
Chain: A
Fragment: Ncd2 Domain
Synonym: Nab1, Egr-1-Binding Protein 1, Transcriptional Reg Protein P54;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ab1350_g01
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P051025-05
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene AB1350
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (740 Kb) [Save to disk]
  • Biological Unit Coordinates (2yuf.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 2YUF
  • Retrieve 2YUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YUF from S2C, [Save to disk]
    • View 2YUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YUF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YUF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yuf_A] [2yuf]
  • SWISS-PROT database: [Q13506]
  • Domain organization of [NAB1_HUMAN] by SWISSPFAM
    • Other resources with information on 2YUF
  • Community annotation for 2YUF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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