2YX5	Structural Genomics, Unknown Function	date	Apr 24, 2007
title	Crystal Structure Of Methanocaldococcus Jannaschii Purs, One Subunits Of Formylglycinamide Ribonucleotide Amidotransfera Purine Biosynthetic Pathway
authors	M.Kanagawa, S.Baba, Y.Agari, L.Q.Chen, Z.Q.Fu, J.Chrzas, B.C.Wang S.Kuramitsu, S.Yokoyama, G.Kawai, G.Sampei, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Upf0062 Protein Mj1593 Chain: A Synonym: Hypothetical Protein Purs Engineered: Yes		Organism_scientific: Methanocaldococcus Jannaschii Organism_taxid: 2190 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-21a
symmetry	Space Group: P 64 2 2	R_factor 0.240 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 96.251 96.251 48.257 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk] Biological Unit Coordinates (2yx5.pdb1.gz) 56 Kb CSU: Contacts of Structural Units for 2YX5 Likely Quarternary Molecular Structure file(s) for 2YX5 Structure Factors (77 Kb) Retrieve 2YX5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YX5 from S2C, [Save to disk] Re-refined 2yx5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YX5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YX5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YX5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yx5_A] [2yx5] SWISS-PROT database: [Q58988] Domain organization of [Y1593_METJA] by SWISSPFAM

Other resources with information on 2YX5

Community annotation for 2YX5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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