2YX6	Structural Genomics, Unknown Function	date	Apr 24, 2007
title	Crystal Structure Of Ph0822
authors	T.Hosaka, K.Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Str Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Hypothetical Protein Ph0822 Chain: A, B, C, D Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 70601 Strain: Ot3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11a
symmetry	Space Group: C 1 2 1	R_factor 0.214 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.932 99.877 48.812 90.00 112.33 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ADP	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (2yx6.pdb1.gz) 37 Kb Biological Unit Coordinates (2yx6.pdb2.gz) 38 Kb Biological Unit Coordinates (2yx6.pdb3.gz) 37 Kb LPC: Ligand-Protein Contacts for 2YX6 CSU: Contacts of Structural Units for 2YX6 Likely Quarternary Molecular Structure file(s) for 2YX6 Structure Factors (188 Kb) Retrieve 2YX6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YX6 from S2C, [Save to disk] Re-refined 2yx6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YX6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YX6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YX6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yx6_C] [2yx6_A] [2yx6] [2yx6_B] [2yx6_D] SWISS-PROT database: [O58552] Domain organization of [O58552_PYRHO] by SWISSPFAM

Other resources with information on 2YX6

Community annotation for 2YX6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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