2YX8	Protein Transport	date	Apr 24, 2007
title	Crystal Structure Of The Extracellular Domain Of Human Ramp1
authors	S.Kusano, M.Kukimoto-Niino, M.Shirouzu, T.Shindo, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Receptor Activity-Modifying Protein 1 Chain: A Fragment: Extracellular Domain Synonym: Crlr Activity- Modifying Protein 1, Calcitonin- Receptor-Like Receptor Activity- Modifying Protein 1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ramp1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pe060926-03
symmetry	Space Group: P 42 2 2	R_factor 0.221 R_Free 0.281
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.097 43.097 82.992 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	MSE	enzyme
note	2YX8 is a representative structure
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the human receptor activity-modifying protein 1 extracellular domain., Kusano S, Kukimoto-Niino M, Akasaka R, Toyama M, Terada T, Shirouzu M, Shindo T, Yokoyama S, Protein Sci. 2008 Nov;17(11):1907-14. Epub 2008 Aug 25. PMID:18725456

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk] Biological Unit Coordinates (2yx8.pdb1.gz) 28 Kb Biological Unit Coordinates (2yx8.pdb2.gz) 15 Kb LPC: Ligand-Protein Contacts for 2YX8 CSU: Contacts of Structural Units for 2YX8 Likely Quarternary Molecular Structure file(s) for 2YX8 Structure Factors (27 Kb) Retrieve 2YX8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YX8 from S2C, [Save to disk] Re-refined 2yx8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YX8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YX8

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YX8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yx8_A] [2yx8] SWISS-PROT database: [O60894] Domain organization of [RAMP1_HUMAN] by SWISSPFAM

Other resources with information on 2YX8

Community annotation for 2YX8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---