2YYN Crystal structure of human bromodomain protein date
authors Kishishita, S., Uchikubo-Kamo, T., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S., RSGI, RIKEN.Structural.Genomics/Proteomics.Initiative.
compound source
symmetry
R_factor
R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2yyn.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (2yyn.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (2yyn.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (2yyn.pdb4.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2YYN
  • Likely Quarternary Molecular Structure file(s) for 2YYN
  • Structure Factors (315 Kb)
  • Retrieve 2YYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YYN from S2C, [Save to disk]
  • Re-refined 2yyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YYN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YYN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yyn_D] [2yyn_C] [2yyn] [2yyn_B] [2yyn_A]
  • SWISS-PROT database: [O15164]
  • Domain organization of [TIF1A_HUMAN] by SWISSPFAM
  • Domain found in 2YYN: [BROMO ] by SMART
    • Other resources with information on 2YYN
  • Community annotation for 2YYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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