2Z5J Transport Protein date Jul 13, 2007
title Free Transportin 1
authors T.Imasaki, T.Shimizu, H.Hashimoto, Y.Hidaka, M.Yamada, M.Sato
compound source
Molecule: Transportin-1
Chain: A
Fragment: Transportin 1
Synonym: Importin Beta-2, Karyopherin Beta-2, M9 Region Int Protein, Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p3
symmetry Space Group: P 41 21 2
R_factor 0.232 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.467 107.467 194.772 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for substrate recognition and dissociation by human transportin 1., Imasaki T, Shimizu T, Hashimoto H, Hidaka Y, Kose S, Imamoto N, Yamada M, Sato M, Mol Cell. 2007 Oct 12;28(1):57-67. PMID:17936704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (2z5j.pdb1.gz) 128 Kb
  • CSU: Contacts of Structural Units for 2Z5J
  • Likely Quarternary Molecular Structure file(s) for 2Z5J
  • Structure Factors (144 Kb)
  • Retrieve 2Z5J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5J from S2C, [Save to disk]
  • Re-refined 2z5j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z5J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z5J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5j] [2z5j_A]
  • SWISS-PROT database: [Q92973]
  • Belongs to the eukaryotic nuclear pore complex (e-npc) family according to TCDB.
  • Domain organization of [TNPO1_HUMAN] by SWISSPFAM
  • Domain found in 2Z5J: [IBN_N ] by SMART
  • Other resources with information on 2Z5J
  • Community annotation for 2Z5J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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