2Z72 Hydrolase date Aug 10, 2007
title New Structure Of Cold-Active Protein Tyrosine Phosphatase At Angstrom
authors H.Tsuruta, B.Mikami, C.Yamamoto, H.Yamagata
compound source
Molecule: Protein-Tyrosine-Phosphatase
Chain: A
Fragment: Unp Residues 22-361
Synonym: Cold-Active Protein Tyrosine Phosphatase
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Shewanella Sp.
Organism_taxid: 50422
Gene: Ppi
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.565 77.306 81.029 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand ZN enzyme Hydrolase E.C.3.1.3.48 BRENDA
note 2Z72 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein tyrosine phosphatase...


  • Primary referenceThe role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase., Tsuruta H, Mikami B, Yamamoto C, Yamagata H, FEBS J. 2008 Sep;275(17):4317-28. Epub 2008 Jul 18. PMID:18647345
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (2z72.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 2Z72
  • CSU: Contacts of Structural Units for 2Z72
  • Likely Quarternary Molecular Structure file(s) for 2Z72
  • Structure Factors (2028 Kb)
  • Retrieve 2Z72 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z72 from S2C, [Save to disk]
  • Re-refined 2z72 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z72 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z72
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z72, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z72] [2z72_A]
  • SWISS-PROT database: [Q9S427]
  • Domain organization of [Q9S427_9GAMM] by SWISSPFAM
  • Domain found in 2Z72: [PP2Ac ] by SMART
  • Other resources with information on 2Z72
  • Community annotation for 2Z72 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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