2ZBO Electron Transport date Oct 26, 2007
title Crystal Structure Of Low-Redox-Potential Cytochrom C6 From Brown Alga Hizikia Fusiformis At 1.6 A Resolution
authors H.Akazaki, F.Kawai, H.Chida, Y.Matsumoto, I.Sirasaki, H.Nakade, M.Hirayama, K.Hosikawa, K.Suruga, T.Satoh, S.Yamada, S.Unzai, W.Hakamata, T.Nishio, S.Y.Park, T.Oku
compound source
Molecule: Cytochrome C6
Chain: A, C, E, G, I, K
Engineered: Yes
Organism_scientific: Hizikia Fusiformis
Organism_taxid: 74103
Strain: Brown Alga
Gene: Petj
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b(+)
symmetry Space Group: P 41 21 2
R_factor 0.184 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.578 84.578 232.911 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand HEM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, K, I, G, E
  • electron transfer activity


  • Primary referenceCloning, expression and purification of cytochrome c(6) from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure., Akazaki H, Kawai F, Chida H, Matsumoto Y, Hirayama M, Hoshikawa K, Unzai S, Hakamata W, Nishio T, Park SY, Oku T, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Aug 1;64(Pt, 8):674-80. Epub 2008 Jul 5. PMID:18678931
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (2zbo.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (2zbo.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (2zbo.pdb3.gz) 18 Kb
  • Biological Unit Coordinates (2zbo.pdb4.gz) 18 Kb
  • Biological Unit Coordinates (2zbo.pdb5.gz) 18 Kb
  • Biological Unit Coordinates (2zbo.pdb6.gz) 18 Kb
  • Biological Unit Coordinates (2zbo.pdb7.gz) 95 Kb
  • LPC: Ligand-Protein Contacts for 2ZBO
  • CSU: Contacts of Structural Units for 2ZBO
  • Likely Quarternary Molecular Structure file(s) for 2ZBO
  • Structure Factors (1620 Kb)
  • Retrieve 2ZBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZBO from S2C, [Save to disk]
  • Re-refined 2zbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZBO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZBO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zbo_I] [2zbo_A] [2zbo] [2zbo_G] [2zbo_E] [2zbo_C] [2zbo_K]
  • SWISS-PROT database: [Q76FN8]
  • Domain organization of [Q76FN8_9PHAE] by SWISSPFAM
  • Other resources with information on 2ZBO
  • Community annotation for 2ZBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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