2ZJD	Apoptosis Inhibitor Apoptosis	date	Mar 05, 2008
title	Crystal Structure Of Lc3-P62 Complex
authors	Y.Ichimura, T.Kumanomidou, Y.Sou, T.Mizushima, J.Ezaki, T.Ueno, E. T.Yamane, K.Tanaka, M.Komatsu
compound		source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain Precursor; Chain: A, C Synonym: Microtubule-Associated Protein 1 Light Chain 3 Bet Map1amap1b Lc3 B, Map1a1b Light Chain 3 B, Map1 Light Cha Protein 2, Autophagy-Related Protein Lc3 B, Autophagy-Relat Ubiquitin-Like Modifier Lc3 B; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-6p
Molecule: Undecameric Peptide From Sequestosome-1 Chain: B, D Fragment: Lc3 Recognition Sequence (Lrs), Unp Residue 334-3 Synonym: Ubiquitin-Binding Protein P62, Stone14 Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Mouse.
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.559 39.592 78.011 90.00 93.30 90.00
method	X-Ray Diffraction	resolution	1.56 Å
Gene Ontology	Chain Function Process Component A, C
Primary reference	Structural basis for sorting mechanism of p62 in selective autophagy., Ichimura Y, Kumanomidou T, Sou YS, Mizushima T, Ezaki J, Ueno T, Kominami E, Yamane T, Tanaka K, Komatsu M, J Biol Chem. 2008 Aug 15;283(33):22847-57. Epub 2008 Jun 4. PMID:18524774

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (2zjd.pdb1.gz) 24 Kb Biological Unit Coordinates (2zjd.pdb2.gz) 3 Kb Biological Unit Coordinates (2zjd.pdb3.gz) 23 Kb Biological Unit Coordinates (2zjd.pdb4.gz) 2 Kb Biological Unit Coordinates (2zjd.pdb5.gz) 25 Kb Biological Unit Coordinates (2zjd.pdb6.gz) 25 Kb CSU: Contacts of Structural Units for 2ZJD Likely Quarternary Molecular Structure file(s) for 2ZJD Structure Factors (585 Kb) Retrieve 2ZJD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZJD from S2C, [Save to disk] Re-refined 2zjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZJD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZJD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZJD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zjd_A] [2zjd_D] [2zjd_B] [2zjd] [2zjd_C] SWISS-PROT database: [Q9GZQ8] [Q64337] Domain organization of [MLP3B_HUMAN] [SQSTM_MOUSE] by SWISSPFAM

Other resources with information on 2ZJD

Community annotation for 2ZJD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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