2ZJR Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans date
authors Harms, J.M., Wilson, D.N., Schluenzen, F., Connell, S.R., Stachelhaus, T., Zaborowska, Z., Spahn, C.M.T., Fucini, P.
compound source
symmetry
R_factor
R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.91
ligand MG enzyme
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Ontology
ChainFunctionProcessComponent
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Primary referenceTranslational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin., Harms JM, Wilson DN, Schluenzen F, Connell SR, Stachelhaus T, Zaborowska Z, Spahn CM, Fucini P, Mol Cell. 2008 Apr 11;30(1):26-38. PMID:18406324
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1668 Kb) [Save to disk]
  • Biological Unit Coordinates (2zjr.pdb1.gz) 1645 Kb
  • LPC: Ligand-Protein Contacts for 2ZJR
  • CSU: Contacts of Structural Units for 2ZJR
  • Likely Quarternary Molecular Structure file(s) for 2ZJR
  • Structure Factors (4888 Kb)
  • Retrieve 2ZJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZJR from S2C, [Save to disk]
  • Re-refined 2zjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZJR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZJR, from MSDmotif at EBI
  • Fold representative 2zjr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zjr_S] [2zjr_N] [2zjr_3] [2zjr_L] [2zjr_U] [2zjr_Y] [2zjr_D] [2zjr_1] [2zjr_I] [2zjr_T] [2zjr] [2zjr_G] [2zjr_X] [2zjr_J] [2zjr_A] [2zjr_P] [2zjr_Q] [2zjr_Z] [2zjr_F] [2zjr_2] [2zjr_W] [2zjr_E] [2zjr_V] [2zjr_O] [2zjr_M] [2zjr_R] [2zjr_C] [2zjr_H] [2zjr_4] [2zjr_B] [2zjr_K]
  • SWISS-PROT database: [Q9RSS7] [Q9RXY1] [Q9RXJ2] [Q9RSK9] [Q9RXJ5] [Q9RSJ5] [Q9RSL2] [Q9RWB4] [Q9RSW7] [Q9RY64] [Q9RXJ7] [Q9RXK0] [Q9RXJ1] [Q9RX88] [Q9RY65] [Q9RRG8] [Q9RXJ4] [Q9RXJ9] [Q9RSL0] [P49228] [Q9RSS4] [Q9RSH2] [Q9RSW6] [Q9RSK0] [Q9RXK2] [Q9RXK1] [Q9RXJ0] [Q9RSL3]
  • Domain organization of [RL11_DEIRA] [RL13_DEIRA] [RL14_DEIRA] [RL15_DEIRA] [RL16_DEIRA] [RL17_DEIRA] [RL18_DEIRA] [RL19_DEIRA] [RL20_DEIRA] [RL21_DEIRA] [RL22_DEIRA] [RL23_DEIRA] [RL24_DEIRA] [RL25_DEIRA] [RL27_DEIRA] [RL28_DEIRA] [RL29_DEIRA] [RL2_DEIRA] [RL30_DEIRA] [RL32_DEIRA] [RL33_DEIRA] [RL34_DEIRA] [RL35_DEIRA] [RL36_DEIRA] [RL3_DEIRA] [RL4_DEIRA] [RL5_DEIRA] [RL6_DEIRA] by SWISSPFAM
  • Domains found in 2ZJR: [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
  • Other resources with information on 2ZJR
  • Community annotation for 2ZJR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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