2ZKH	Immune System	date	Mar 21, 2008
title	Human Thrombopoietin Neutralizing Antibody Tn1 Fab
authors	S.Arai, T.Tamada, E.Honjo, Y.Maeda, R.Kuroki
compound		source
Molecule: Monoclonal Tn1 Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
Molecule: Monoclonal Tn1 Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Expression_system_cell: Hybridoma Cell
symmetry	Space Group: P 21 21 21	R_factor 0.193 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 57.667 71.416 104.433 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.04 Å
Primary reference	An insight into the thermodynamic characteristics of human thrombopoietin complexation with TN1 antibody., Arai S, Shibazaki C, Adachi M, Honjo E, Tamada T, Maeda Y, Tahara T, Kato T, Miyazaki H, Blaber M, Kuroki R, Protein Sci. 2016 Oct;25(10):1786-96. doi: 10.1002/pro.2985. Epub 2016 Jul 25. PMID:27419667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (2zkh.pdb1.gz) 69 Kb CSU: Contacts of Structural Units for 2ZKH Likely Quarternary Molecular Structure file(s) for 2ZKH Structure Factors (417 Kb) Retrieve 2ZKH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZKH from S2C, [Save to disk] Re-refined 2zkh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZKH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZKH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZKH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zkh_L] [2zkh_H] [2zkh] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 2ZKH: [IG_like] [IGv ] by SMART

Other resources with information on 2ZKH

Community annotation for 2ZKH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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