2ZL6 Viral Protein date Apr 02, 2008
title Atomic Resolution Structural Characterization Of Recognition Blood Group Antigens By Norwalk Virus
authors J.M.Choi, A.M.Huston, M.K.Estes, B.V.V.Prasad
compound source
Molecule: 58 Kd Capsid Protein
Chain: A, B
Fragment: P-Domain
Engineered: Yes
Organism_scientific: Norwalk Virus
Strain: G.I
Gene: Orf2
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phismal-C2et
symmetry Space Group: P 31 2 1
R_factor 0.179 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.512 83.512 162.929 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.43 Å
ligand ACT, BGC, FUC, GAL, MG, NAG enzyme
Primary referenceAtomic resolution structural characterization of recognition of histo-blood group antigens by Norwalk virus., Choi JM, Hutson AM, Estes MK, Prasad BV, Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9175-80. Epub 2008 Jul 2. PMID:18599458
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2zl6.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 2ZL6
  • CSU: Contacts of Structural Units for 2ZL6
  • Likely Quarternary Molecular Structure file(s) for 2ZL6
  • Structure Factors (1732 Kb)
  • Retrieve 2ZL6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZL6 from S2C, [Save to disk]
  • Re-refined 2zl6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZL6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZL6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZL6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zl6] [2zl6_B] [2zl6_A]
  • SWISS-PROT database: [Q83884]
  • Domain organization of [CAPSD_NVN68] by SWISSPFAM
  • Other resources with information on 2ZL6
  • Community annotation for 2ZL6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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