2ZNY	Dna Binding Protein	date	May 02, 2008
title	Crystal Structure Of The Ffrp
authors	M.Yamada, M.Suzuki
compound		source
Molecule: Uncharacterized Hth-Type Transcriptional Regulato Chain: A, B, C, D, E, F, G, H Synonym: Archaeal Transcription Repressor Engineered: Yes		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 53953 Strain: Ot3 Gene: Ph1519 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.254 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.310 73.500 103.060 90.00 98.47 90.00
method	X-Ray Diffraction	resolution	2.59 Å
ligand	ARG	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Interactions between the archaeal transcription repressor FL11 and its coregulators lysine and arginine., Yamada M, Ishijima SA, Suzuki M, Proteins. 2009 Feb 1;74(2):520-5. PMID:19004003

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk] Biological Unit Coordinates (2zny.pdb1.gz) 48 Kb Biological Unit Coordinates (2zny.pdb2.gz) 49 Kb Biological Unit Coordinates (2zny.pdb3.gz) 49 Kb Biological Unit Coordinates (2zny.pdb4.gz) 48 Kb Biological Unit Coordinates (2zny.pdb5.gz) 186 Kb LPC: Ligand-Protein Contacts for 2ZNY CSU: Contacts of Structural Units for 2ZNY Likely Quarternary Molecular Structure file(s) for 2ZNY Structure Factors (570 Kb) Retrieve 2ZNY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZNY from S2C, [Save to disk] Re-refined 2zny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZNY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZNY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZNY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zny_H] [2zny_F] [2zny_B] [2zny_E] [2zny_A] [2zny_G] [2zny_D] [2zny_C] [2zny] SWISS-PROT database: [O59188] Domain organization of [REG6_PYRHO] by SWISSPFAM Domain found in 2ZNY: [HTH_ASNC ] by SMART

Other resources with information on 2ZNY

Community annotation for 2ZNY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---