2ZSY Oxygen Transport date Sep 18, 2008
title Carbonmonoxy Sperm Whale Myoglobin At 140 K: Laser On [750 M
authors A.Tomita, T.Sato, K.Ichiyanagi, S.Nozawa, H.Ichikawa, M.Chollet, F S.Y.Park, S.Koshihara, S.Adachi
compound source
Molecule: Myoglobin
Chain: A
Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
symmetry Space Group: P 1 21 1
R_factor 0.169 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.381 30.549 63.841 90.00 105.63 90.00
method X-Ray Diffractionresolution 1.21 Å
ligand CMO, HEM, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceVisualizing breathing motion of internal cavities in concert with ligand migration in myoglobin., Tomita A, Sato T, Ichiyanagi K, Nozawa S, Ichikawa H, Chollet M, Kawai F, Park SY, Tsuduki T, Yamato T, Koshihara SY, Adachi SI, Proc Natl Acad Sci U S A. 2009 Feb 9. PMID:19204297
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (2zsy.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2ZSY
  • CSU: Contacts of Structural Units for 2ZSY
  • Likely Quarternary Molecular Structure file(s) for 2ZSY
  • Structure Factors (377 Kb)
  • Retrieve 2ZSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZSY from S2C, [Save to disk]
  • Re-refined 2zsy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZSY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZSY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zsy] [2zsy_A]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
  • Other resources with information on 2ZSY
  • Community annotation for 2ZSY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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