2ZZU	Hydrolase Blood Clotting	date	Feb 25, 2009
title	Human Factor Viia-Tissue Factor Complexed With Ethylsulfonam (3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
authors	S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Sato, M.Ohta, T.Kozono
compound		source
Molecule: Factor Vii Light Chain Chain: L Fragment: Unp Residues 61-212 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Cho
Molecule: Factor Vii Heavy Chain Chain: H Fragment: Unp Residues 213-466 Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Cho
Molecule: Tissue Factor Chain: T Fragment: Unp Residues 33-250 Synonym: Tf, Coagulation Factor III, Thromboplastin Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm-109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 21 21 21	R_factor 0.221 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.400 82.220 123.470 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	359, BGC, CA, CGU, FUC	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T
Primary reference	Design and synthesis of peptidomimetic factor VIIa inhibitors., Shiraishi T, Kadono S, Haramura M, Kodama H, Ono Y, Iikura H, Esaki T, Koga T, Hattori K, Watanabe Y, Sakamoto A, Yoshihashi K, Kitazawa T, Esaki K, Ohta M, Sato H, Kozono T, Chem Pharm Bull (Tokyo). 2010 Jan;58(1):38-44. PMID:20045964

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (2zzu.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 2ZZU CSU: Contacts of Structural Units for 2ZZU Likely Quarternary Molecular Structure file(s) for 2ZZU Structure Factors (240 Kb) Retrieve 2ZZU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZZU from S2C, [Save to disk] Re-refined 2zzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZZU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZZU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZZU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zzu_T] [2zzu_H] [2zzu] [2zzu_L] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2ZZU: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2ZZU

Community annotation for 2ZZU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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