309D Dna date Jan 07, 1997
title A Dna Decamer With A Sticky End: The Crystal Structure Of D-
authors H.X.Qiu, J.C.Dewan, N.C.Seeman
compound source
Molecule: Dna (5'-D(Cpgpapcpgpaptpcpgpt)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.450 34.660 32.170 90.00 113.40 90.00
method X-Ray Diffractionresolution 2.60 Å
note 309D (Molecule of the Month:pdb119)supersedes 273D
Primary referenceA DNA decamer with a sticky end: the crystal structure of d-CGACGATCGT., Qiu H, Dewan JC, Seeman NC, J Mol Biol 1997 Apr 11;267(4):881-98. PMID:9135119
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (309d.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 309D
  • Likely Quarternary Molecular Structure file(s) for 309D
  • Retrieve 309D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 309D from S2C, [Save to disk]
    • View 309D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 309D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 309D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [309d_A] [309d] [309d_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 309D
  • Community annotation for 309D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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