310D Rna date May 25, 1996
title Crystal Structure Of 2'-O-Me(Cgcgcg)2: An Rna Duplex At 1.3 A Resolution. Hydration Pattern Of 2'-O-Methylated Rna
authors D.A.Adamiak, J.Milecki, R.W.Adamiak, Z.Dauter, W.R.Rypniewski
compound source
Molecule: Rna (5'-R((Omc)P(Omg)P(Omc)P(Omg)P(Omc) P(Omg))-3');
Chain: A, B
Engineered: Yes

symmetry Space Group: P 61 2 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.270 26.270 160.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand MG, OMC, OMG enzyme
Primary referenceCrystal structure of 2'-O-Me(CGCGCG)2, an RNA duplex at 1.30 A resolution. Hydration pattern of 2'-O-methylated RNA., Adamiak DA, Milecki J, Popenda M, Adamiak RW, Dauter Z, Rypniewski WR, Nucleic Acids Res 1997 Nov 15;25(22):4599-607. PMID:9358171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (310d.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 310D
  • CSU: Contacts of Structural Units for 310D
  • Likely Quarternary Molecular Structure file(s) for 310D
  • Structure Factors (79 Kb)
  • Retrieve 310D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 310D from S2C, [Save to disk]
  • Re-refined 310d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 310D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 310D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 310D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 310d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [310d_B] [310d_A] [310d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 310D
  • Community annotation for 310D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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