314D Dna date Feb 04, 1997
title Z-Dna Hexamer With 5' Overhangs That Form A Reverse Wobble B
authors B.H.M.Mooers, B.F.Eichman, P.S.Ho
compound source
Molecule: Dna (5'-D(Gpcpgpcpgpcpg)-3')
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'-D(Tpcpgpcpgpcpg)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.191 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
20.280 29.410 51.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MG, NCO enzyme
Primary referenceThe structures and relative stabilities of d(G x G) reverse Hoogsteen, d(G x T) reverse wobble, and d(G x C) reverse Watson-Crick base-pairs in DNA crystals., Mooers BH, Eichman BF, Ho PS, J Mol Biol 1997 Jun 27;269(5):796-810. PMID:9223642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (10 Kb) [Save to disk]
  • Biological Unit Coordinates (314d.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 314D
  • CSU: Contacts of Structural Units for 314D
  • Likely Quarternary Molecular Structure file(s) for 314D
  • Structure Factors (18 Kb)
  • Retrieve 314D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 314D from S2C, [Save to disk]
  • Re-refined 314d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 314D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 314D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 314D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [314d] [314d_B] [314d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 314D
  • Community annotation for 314D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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