343D Dna date Jun 26, 1997
title Structural Parameters From Single-Crystal Structures For Accurate Models Of A-Dna
authors B.H.M.Mooers, B.F.Eichman, P.S.Ho
compound source
Molecule: Dna (5'-D(Gp(5cm)Ptpapgpc)-3')
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 1
R_factor 0.204 R_Free 0.286
length a length b length c angle alpha angle beta angle gamma
23.880 33.820 40.120 85.05 82.91 74.93
method X-Ray Diffractionresolution 2.10 Å
ligand 5CM enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (343d.pdb1.gz) 6 Kb
  • Biological Unit Coordinates (343d.pdb2.gz) 6 Kb
  • Biological Unit Coordinates (343d.pdb3.gz) 6 Kb
  • Biological Unit Coordinates (343d.pdb4.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 343D
  • CSU: Contacts of Structural Units for 343D
  • Likely Quarternary Molecular Structure file(s) for 343D
  • Structure Factors (56 Kb)
  • Retrieve 343D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 343D from S2C, [Save to disk]
  • Re-refined 343d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 343D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 343D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 343D, from MSDmotif at EBI
  • Fold representative 343d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [343d_C] [343d_F] [343d_G] [343d_A] [343d_H] [343d_B] [343d_E] [343d] [343d_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 343D
  • Community annotation for 343D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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