387D Rna date Apr 14, 1998
title Rna Pseudoknot With 3d Domain Swapping
authors S.E.Lietzke, C.E.Kundrot, C.L.Barnes
compound source
Molecule: Rna Pseudoknot
Chain: A
Engineered: Yes
Other_details: 26-Mer
Synthetic: Yes
symmetry Space Group: P 43 2 2
R_factor 0.181 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.600 61.600 98.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (387d.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 387D
  • Likely Quarternary Molecular Structure file(s) for 387D
  • Retrieve 387D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 387D from S2C, [Save to disk]
  • View 387D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 387D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 387D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [387d_A] [387d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 387D
  • Community annotation for 387D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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