3A2H	Hormone Receptor, Transcription	date	May 20, 2009
title	Crystal Structure Of The Rat Vitamin D Receptor Ligand Bindi Complexed With Tei-9647 And A Synthetic Peptide Containing Box Of Drip 205
authors	S.Kakuda, M.Takimoto-Kamimura
compound		source
Molecule: Vitamin D3 Receptor Chain: A Fragment: Ligand Binding Domain, Residues 116-423 Synonym: Vdr, 1,25-Dihydroxyvitamin D3 Receptor, Nuclear Re Subfamily 1 Group I Member 1; Engineered: Yes Mutation: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Vdr, Nr1i1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Mediator Of Rna Polymerase II Transcription Subun Peptide; Chain: B Synonym: Drip 205 Nr2 Box Peptide, Mediator Complex Subunit Peroxisome Proliferator-Activated Receptor-Binding Protein, Receptor-Interacting Protein Complex Component Drip205, Act Recruited Cofactor 205 Kda Component; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Humans Organism_taxid: 9606 Other_details: Chemical Synthesis
symmetry	Space Group: C 1 2 1	R_factor 0.229 R_Free 0.309
crystal cell	length a length b length c angle alpha angle beta angle gamma 124.809 45.349 46.662 90.00 100.13 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	TEJ	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of the histidine-mediated vitamin D receptor agonistic and antagonistic mechanisms of (23S)-25-dehydro-1alpha-hydroxyvitamin D(3)-26,23-lactone., Kakuda S, Ishizuka S, Eguchi H, Mizwicki MT, Norman AW, Takimoto-Kamimura M, Acta Crystallogr D Biol Crystallogr. 2010 Aug;66(Pt 8):918-26. Epub 2010, Jul 10. PMID:20693691

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (3a2h.pdb1.gz) 41 Kb Biological Unit Coordinates (3a2h.pdb2.gz) 40 Kb Biological Unit Coordinates (3a2h.pdb3.gz) 2 Kb LPC: Ligand-Protein Contacts for 3A2H CSU: Contacts of Structural Units for 3A2H Structure Factors (138 Kb) Retrieve 3A2H in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3A2H from S2C, [Save to disk] Re-refined 3a2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3A2H in 3D

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Visual 3D analysis of 3A2H

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3A2H, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3a2h] [3a2h_B] [3a2h_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3A2H: [HOLI ] by SMART

Other resources with information on 3A2H

Community annotation for 3A2H at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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