3A38 Electron Transport date Jun 10, 2009
title Crystal Structure Of High-Potential Iron-Sulfur Protein From Thermochromatium Tepidum At 0.7 Angstrom Resolution
authors K.Takeda, K.Kusumoto, Y.Hirano, K.Miki
compound source
Molecule: High-Potential Iron-Sulfur Protein
Chain: A
Synonym: Hipip
 Organism_scientific: Thermochromatium Tepidum
Organism_common: Chromatium Tepidum
Organism_taxid: 1050
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.509 58.959 23.415 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.70 Å
ligand GOL, SF4, SO4 enzyme
note 3A38 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDetailed assessment of X-ray induced structural perturbation in a crystalline state protein., Takeda K, Kusumoto K, Hirano Y, Miki K, J Struct Biol. 2009 Sep 24. PMID:19782139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (3a38.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3A38
  • CSU: Contacts of Structural Units for 3A38
  • Structure Factors (1607 Kb)
  • Retrieve 3A38 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A38 from S2C, [Save to disk]
  • Re-refined 3a38 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3A38 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3A38
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A38, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a38_A] [3a38]
  • SWISS-PROT database: [P80176]
  • Domain organization of [HIP_THETI] by SWISSPFAM
    • Other resources with information on 3A38
  • Community annotation for 3A38 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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