3A54 Hydrolase date Jul 30, 2009
title Crystal Structure Of The A47q1 Mutant Of Pro-Protein-Glutami
authors R.Hashizume, S.Yamaguchi, B.Mikami
compound source
Molecule: Protein-Glutaminase
Chain: A, B
Synonym: Pro-Protein-Glutaminase
Ec: 3.5.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Chryseobacterium Proteolyticum
Organism_taxid: 118127
Strain: Dh5a
Gene: Prga
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-20b
symmetry Space Group: P 21 21 21
R_factor 0.140 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.986 104.113 134.189 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Hydrolase E.C.3.5.1 BRENDA
Primary referenceCrystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex., Hashizume R, Maki Y, Mizutani K, Takahashi N, Matsubara H, Sugita A, Sato K, Yamaguchi S, Mikami B, J Biol Chem. 2011 Nov 4;286(44):38691-702. Epub 2011 Sep 16. PMID:21926168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (3a54.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (3a54.pdb2.gz) 113 Kb
  • CSU: Contacts of Structural Units for 3A54
  • Structure Factors (1161 Kb)
  • Retrieve 3A54 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A54 from S2C, [Save to disk]
  • Re-refined 3a54 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A54 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A54
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A54, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a54_A] [3a54] [3a54_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3A54
  • Community annotation for 3A54 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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