3A7B Immune System date Sep 20, 2009
title Crystal Structure Of Tlr2-Streptococcus Pneumoniae Lipoteich Complex
authors J.Y.Kang, M.S.Jin, J.O.Lee
compound source
Molecule: Toll-Like Receptor 2, Variable Lymphocyte Recepto
Chain: A
Fragment: Extracellular Domain, Unp Residues 1-506(Mouse), Residues 133-200(Inshore Hagfish);
Synonym: Tlr2, Vlrb.61
Engineered: Yes
Organism_scientific: Mus Musculus, Eptatretus Burgeri
Organism_common: Mouse, Inshore Hagfish
Organism_taxid: 10090, 7764
Gene: Tlr2
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
Expression_system_strain: Hi-5
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pvl1393
symmetry Space Group: P 21 21 21
R_factor 0.234 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.578 83.190 214.658 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.53 Å
ligand LTC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRecognition of lipopeptide patterns by Toll-like receptor 2-Toll-like receptor 6 heterodimer., Kang JY, Nan X, Jin MS, Youn SJ, Ryu YH, Mah S, Han SH, Lee H, Paik SG, Lee JO, Immunity. 2009 Dec 18;31(6):873-84. PMID:19931471
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (3a7b.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 3A7B
  • CSU: Contacts of Structural Units for 3A7B
  • Structure Factors (501 Kb)
  • Retrieve 3A7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A7B from S2C, [Save to disk]
  • Re-refined 3a7b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A7B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A7B, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a7b_A] [3a7b]
  • SWISS-PROT database: [Q4G1L2] [Q9QUN7]
  • Domain organization of [Q4G1L2_EPTBU] [TLR2_MOUSE] by SWISSPFAM
  • Domains found in 3A7B: [LRR] [LRRCT] [LRR_TYP ] by SMART
  • Other resources with information on 3A7B
  • Community annotation for 3A7B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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