3A7W Hydrolase date Oct 05, 2009
title Crystal Structure Of Trypsin Complexed With (E)-4-((Tetrahyd Pyran-2-Yloxyimino)Methyl)Benzimidamide (Soaking 4hours)
authors J.Yamane, M.Yao, I.Tanaka
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin, Alpha-Trypsin Chain 1, Alpha-Trypsin
Ec: 3.4.21.4
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.142 R_Free 0.168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.447 58.542 66.562 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand CA, GOL, O04, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3a7w.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3A7W
  • CSU: Contacts of Structural Units for 3A7W
  • Structure Factors (175 Kb)
  • Retrieve 3A7W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A7W from S2C, [Save to disk]
  • Re-refined 3a7w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3A7W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3A7W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A7W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a7w_A] [3a7w]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A7W: [Tryp_SPc ] by SMART
    • Other resources with information on 3A7W
  • Community annotation for 3A7W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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