3A8P Signaling Protein date Oct 07, 2009
title Crystal Structure Of The Tiam2 Phccex Domain
authors S.Terawaki, K.Kitano, T.Mori, Y.Zhai, Y.Higuchi, N.Itoh, T.Watanab K.Kaibuchi, T.Hakoshima
compound source
Molecule: T-Lymphoma Invasion And Metastasis-Inducing Prote
Chain: A, B, C, D
Fragment: Phccex Domain, Residues 500-757
Synonym: Tiam-2, Sif And Tiam1-Like Exchange Factor
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Tiam2, Kiaa2016, Stef
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p-3
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.690 104.790 115.970 90.00 80.55 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe PHCCEx domain of Tiam1/2 is a novel protein- and membrane-binding module., Terawaki SI, Kitano K, Mori T, Zhai Y, Higuchi Y, Itoh N, Watanabe T, Kaibuchi K, Hakoshima T, EMBO J. 2009 Nov 5. PMID:19893486
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (3a8p.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3a8p.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (3a8p.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (3a8p.pdb4.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3A8P
  • Structure Factors (534 Kb)
  • Retrieve 3A8P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A8P from S2C, [Save to disk]
  • Re-refined 3a8p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A8P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A8P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A8P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a8p_C] [3a8p_A] [3a8p] [3a8p_B] [3a8p_D]
  • SWISS-PROT database: [Q6ZPF3]
  • Domain organization of [TIAM2_MOUSE] by SWISSPFAM
  • Domain found in 3A8P: [PH ] by SMART
  • Other resources with information on 3A8P
  • Community annotation for 3A8P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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