3A95 Hydrolase date Oct 15, 2009
title Crystal Structure Of Hen Egg White Lysozyme Soaked With 100m Ph3.8
authors S.Abe, T.Koshiyama, T.Ohki, T.Hikage, Y.Watanabe, T.Ueno
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D Iv
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
symmetry Space Group: P 43 21 2
R_factor 0.200 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.956 77.956 37.305 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CL, NA, RH3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceElucidation of Metal-Ion Accumulation Induced by Hydrogen Bonds on Protein Surfaces by Using Porous Lysozyme Crystals Containing Rh(III) Ions as the Model Surfaces., Ueno T, Abe S, Koshiyama T, Ohki T, Hikage T, Watanabe Y, Chemistry. 2010 Mar 1;16(9):2730-40. PMID:20146274
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (3a95.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 3A95
  • CSU: Contacts of Structural Units for 3A95
  • Structure Factors (237 Kb)
  • Retrieve 3A95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3A95 from S2C, [Save to disk]
  • Re-refined 3a95 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3A95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3A95
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3A95, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3a95_A] [3a95]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3A95: [LYZ1 ] by SMART
  • Other resources with information on 3A95
  • Community annotation for 3A95 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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