3ACL Metal Binding Protein date Jan 05, 2010
title Crystal Structure Of Human Pirin In Complex With Triphenyl C
authors H.Okumura, I.Miyazaki, S.Simizu, H.Osada
compound source
Molecule: Pirin
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pir
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset C
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.343 67.415 107.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand 3F1, FE2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription cofactor activ...


  • Primary referenceA small-molecule inhibitor shows that pirin regulates migration of melanoma cells., Miyazaki I, Simizu S, Okumura H, Takagi S, Osada H, Nat Chem Biol. 2010 Sep;6(9):667-73. Epub 2010 Aug 15. PMID:20711196
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3acl.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3ACL
  • CSU: Contacts of Structural Units for 3ACL
  • Structure Factors (112 Kb)
  • Retrieve 3ACL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ACL from S2C, [Save to disk]
  • Re-refined 3acl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ACL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ACL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ACL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3acl_A] [3acl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ACL
  • Community annotation for 3ACL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science