3AJF Viral Protein date Jun 05, 2010
title Structural Insigths Into Dsrna Binding And Rna Silencing Sup By Ns3 Protein Of Rice Hoja Blanca Tenuivirus
authors Y.A.Yuan
compound source
Molecule: Non-Structural Protein 3
Chain: A, B, C, D
Fragment: Helix Domain
Engineered: Yes
 Organism_scientific: Rice Hoja Blanca Virus
Organism_taxid: 480611
Strain: Cr
Gene: Ns3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 41 21 2
R_factor 0.212 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.690 79.690 122.087 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MSE, SO4 enzyme
note 3AJF is a representative structure
Primary referenceStructural implications into dsRNA binding and RNA silencing suppression by NS3 protein of Rice Hoja Blanca Tenuivirus., Yang X, Tan SH, Teh YJ, Yuan YA, RNA. 2011 May;17(5):903-11. Epub 2011 Apr 1. PMID:21460234
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (3ajf.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (3ajf.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 3AJF
  • CSU: Contacts of Structural Units for 3AJF
  • Structure Factors (404 Kb)
  • Retrieve 3AJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AJF from S2C, [Save to disk]
  • Re-refined 3ajf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3AJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3AJF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3AJF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ajf_A] [3ajf_D] [3ajf_C] [3ajf] [3ajf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3AJF
  • Community annotation for 3AJF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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