3AQV Transferase Transferase Inhibitor date Nov 19, 2010
title Human Amp-Activated Protein Kinase Alpha 2 Subunit Kinase Do (T172d) Complexed With Compound C
authors N.Handa, T.Takagi, S.Saijo, S.Kishishita, M.Toyama, T.Terada, M.Sh S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: 5'-Amp-Activated Protein Kinase Catalytic Subunit
Chain: A
Fragment: Kinase Domain
Synonym: Ampk Subunit Alpha-2
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px060824-01
symmetry Space Group: P 43 21 2
R_factor 0.221 R_Free 0.281
length a length b length c angle alpha angle beta angle gamma
70.476 70.476 130.508 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.08 Å
ligand TAK enzyme Transferase E.C. BRENDA

Primary referenceStructural basis for compound C inhibition of the human AMP-activated protein kinase alpha2 subunit kinase domain., Handa N, Takagi T, Saijo S, Kishishita S, Takaya D, Toyama M, Terada T, Shirouzu M, Suzuki A, Lee S, Yamauchi T, Okada-Iwabu M, Iwabu M, Kadowaki T, Minokoshi Y, Yokoyama S, Acta Crystallogr D Biol Crystallogr. 2011 May;67(Pt 5):480-7. Epub 2011 Apr 14. PMID:21543851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (3aqv.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3AQV
  • CSU: Contacts of Structural Units for 3AQV
  • Structure Factors (547 Kb)
  • Retrieve 3AQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3AQV from S2C, [Save to disk]
  • Re-refined 3aqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3AQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3AQV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3AQV, from MSDmotif at EBI
  • Fold representative 3aqv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3aqv_A] [3aqv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3AQV: [S_TKc ] by SMART
  • Other resources with information on 3AQV
  • Community annotation for 3AQV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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