3B3I Immune System date Oct 22, 2007
title Citrullination-Dependent Differential Presentation Of A Self By Hla-B27 Subtypes
authors A.Beltrami, M.Rossmann, M.T.Fiorillo, F.Paladini, R.Sorrentino, W P.Kumar, A.Ziegler, B.Uchanska-Ziegler
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-27 Alph
Chain: A
Fragment: Extracelluar Domain, Residues 25-300
Synonym: Mhc Class I Antigen B27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Vasoactive Intestinal Polypeptide Receptor 1
Chain: C
Fragment: Residues 400-408
Synonym: Vip-R-1, Pituitary Adenylate Cyclase-Activating Po Type II Receptor, Pacap Type II Receptor, Pacap-R-2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vipr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.343 82.303 109.279 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand CIR, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceCitrullination-dependent Differential Presentation of a Self-peptide by HLA-B27 Subtypes., Beltrami A, Rossmann M, Fiorillo MT, Paladini F, Sorrentino R, Saenger W, Kumar P, Ziegler A, Uchanska-Ziegler B, J Biol Chem. 2008 Oct 3;283(40):27189-27199. Epub 2008 Jul 23. PMID:18650441
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (3b3i.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 3B3I
  • CSU: Contacts of Structural Units for 3B3I
  • Likely Quarternary Molecular Structure file(s) for 3B3I
  • Structure Factors (641 Kb)
  • Retrieve 3B3I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B3I from S2C, [Save to disk]
  • Re-refined 3b3i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B3I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B3I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B3I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b3i] [3b3i_C] [3b3i_A] [3b3i_B]
  • SWISS-PROT database: [P03989] [P61769] [P32241]
  • Belongs to the g-protein-coupled receptor (gpcr) family according to TCDB.
  • Domain organization of [1B27_HUMAN] [B2MG_HUMAN] [VIPR1_HUMAN] by SWISSPFAM
  • Domain found in 3B3I: [IGc1 ] by SMART
  • Other resources with information on 3B3I
  • Community annotation for 3B3I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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