OCA Atlas for 3B3K

3B3K

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

LRG BindingDB

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Crystal structure of the peroxisome proliferator-activated receptor gamma (PPARgamma) ligand binding domain complexed with a novel partial agonist: a new region of the hydrophobic pocket could be exploited for drug design., Montanari R, Saccoccia F, Scotti E, Crestani M, Godio C, Gilardi F, Loiodice F, Fracchiolla G, Laghezza A, Tortorella P, Lavecchia A, Novellino E, Mazza F, Aschi M, Pochetti G, J Med Chem. 2008 Dec 25;51(24):7768-76. PMID:19053776

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]

Biological Unit Coordinates (3b3k.pdb1.gz) 90 Kb

Biological Unit Coordinates (3b3k.pdb2.gz) 91 Kb

LPC: Ligand-Protein Contacts for 3B3K

CSU: Contacts of Structural Units for 3B3K

Likely Quarternary Molecular Structure file(s) for 3B3K

Structure Factors (164 Kb)

Retrieve 3B3K in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3B3K from S2C, [Save to disk]

Re-refined 3b3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B3K in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b3k] [3b3k_A] [3b3k_B]

SWISS-PROT database: [P37231]

Domain found in 3B3K: [HOLI ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]