3B4P Biosynthetic Protein date Oct 24, 2007
title Crystal Structure Of Phenazine Biosynthesis Protein Phzab From Burkholderia Cepacia R18194, Complex With 2- (Cyclohexylamino)Benzoic Acid
authors E.G.Ahuja, P.Janning, M.Mentel, A.Graebsch, R.Breinbauer, W.Blankenfeldt
compound source
Molecule: Phenazine Biosynthesis Protein Ab
Chain: A, B
Engineered: Yes
Organism_scientific: Burkholderia Sp.
Organism_common: Burkholderia Cepacia
Organism_taxid: 36773
Strain: R18194
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 32 2 1
R_factor 0.170 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.550 64.550 160.390 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand 3B4, ACT, AZI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referencePhzA/B catalyzes the formation of the tricycle in phenazine biosynthesis., Ahuja EG, Janning P, Mentel M, Graebsch A, Breinbauer R, Hiller W, Costisella B, Thomashow LS, Mavrodi DV, Blankenfeldt W, J Am Chem Soc. 2008 Dec 17;130(50):17053-61. PMID:19053436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3b4p.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3B4P
  • CSU: Contacts of Structural Units for 3B4P
  • Likely Quarternary Molecular Structure file(s) for 3B4P
  • Structure Factors (299 Kb)
  • Retrieve 3B4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B4P from S2C, [Save to disk]
  • Re-refined 3b4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B4P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B4P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b4p_A] [3b4p] [3b4p_B]
  • SWISS-PROT database: [Q396C9]
  • Domain organization of [Q396C9_BURS3] by SWISSPFAM
  • Other resources with information on 3B4P
  • Community annotation for 3B4P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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