3B5P Oxidoreductase date Oct 26, 2007
title Crystal Structure Of A Cadd-Like Protein Of Unknown Function (Npun_f6505) From Nostoc Punctiforme Pcc 73102 At 2.00 A Re
authors Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Cadd-Like Protein Of Unknown Function
Chain: A
Engineered: Yes
 Organism_scientific: Nostoc Punctiforme
Organism_taxid: 63737
Strain: Pcc 73102
Gene: Zp_00108531.1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hk100
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Speedet
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.670 78.510 45.580 90.00 112.29 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EDO, MSE enzyme
Gene ZP
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3b5p.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3B5P
  • CSU: Contacts of Structural Units for 3B5P
  • Structure Factors (2023 Kb)
  • Retrieve 3B5P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B5P from S2C, [Save to disk]
  • Re-refined 3b5p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B5P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B5P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B5P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b5p] [3b5p_A]
  • SWISS-PROT database: [D0VWS1]
  • Domain organization of [D0VWS1_NOSP7] by SWISSPFAM
    • Other resources with information on 3B5P
  • Community annotation for 3B5P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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