3B7X Isomerase date Oct 31, 2007
title Crystal Structure Of Human Fk506-Binding Protein 6
authors J.R.Walker, T.Davis, C.Butler-Cole, R.Paramanathan, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, S.Dhe-Paganon, Struct Genomics Consortium (Sgc)
compound source
Molecule: Fk506-Binding Protein 6
Chain: A
Fragment: Ppiase Fkbp-Type Domain: Residues 12-144
Synonym: Peptidyl-Prolyl Cis-Trans Isomerase, Ppiase, Rotam Kda Fk506-Binding Protein, Fkbp-36, Immunophilin Fkbp36;
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp6, Fkbp36
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28a-Mhl
symmetry Space Group: I 41 2 2
R_factor 0.256 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.059 55.059 229.965 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3b7x.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 3B7X
  • Likely Quarternary Molecular Structure file(s) for 3B7X
  • Structure Factors (144 Kb)
  • Retrieve 3B7X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B7X from S2C, [Save to disk]
  • Re-refined 3b7x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B7X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B7X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B7X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b7x] [3b7x_A]
  • SWISS-PROT database: [O75344]
  • Domain organization of [FKBP6_HUMAN] by SWISSPFAM
  • Other resources with information on 3B7X
  • Community annotation for 3B7X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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