3B84 Transcription date Oct 31, 2007
title Crystal Structure Of The Human Btb Domain Of The Krueppel Re Finger Protein 3 (Hkr3)
authors P.Filippakopoulos, A.Bullock, C.Cooper, T.Keates, E.Salah, E.Pilk A.C.W.Pike, F.Von Delft, C.H.Arrowsmith, A.M.Edwards, J.Weigelt Structural Genomics Consortium (Sgc)
compound source
Molecule: Zinc Finger And Btb Domain-Containing Protein 48
Chain: A
Fragment: Residues 4-120
Synonym: Krueppel-Related Zinc Finger Protein 3, Protein Hk
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zbtb48, Hkr3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)(R3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.186 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.375 50.375 86.093 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.74 Å
ligand EDO, UNX enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (3b84.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3B84
  • CSU: Contacts of Structural Units for 3B84
  • Likely Quarternary Molecular Structure file(s) for 3B84
  • Structure Factors (210 Kb)
  • Retrieve 3B84 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B84 from S2C, [Save to disk]
  • Re-refined 3b84 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3B84 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3B84
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B84, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b84_A] [3b84]
  • SWISS-PROT database: [P10074]
  • Domain organization of [ZBT48_HUMAN] by SWISSPFAM
  • Domain found in 3B84: [BTB ] by SMART
  • Other resources with information on 3B84
  • Community annotation for 3B84 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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