3B8Q	Transferase	date	Nov 01, 2007
title	Crystal Structure Of The Vegfr2 Kinase Domain In Complex Wit Naphthamide Inhibitor
authors	D.A.Whittington, A.M.Long, Y.Gu, H.Zhao
compound		source
Molecule: Vascular Endothelial Growth Factor Receptor 2 Chain: A, B Fragment: Kinase Domain; Unp Residues 815-939, 990-1171 Synonym: Vegfr-2, Kinase Insert Domain Receptor, Protein-Ty Kinase Receptor Flk-1, Cd309 Antigen; Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdr, Flk1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.218 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.116 67.782 88.089 90.00 92.14 90.00
method	X-Ray Diffraction	resolution	2.75 Å
ligand	900 BindingDB	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Naphthamides as novel and potent vascular endothelial growth factor receptor tyrosine kinase inhibitors: design, synthesis, and evaluation., Harmange JC, Weiss MM, Germain J, Polverino AJ, Borg G, Bready J, Chen D, Choquette D, Coxon A, Demelfi T, Dipietro L, Doerr N, Estrada J, Flynn J, Graceffa RF, Harriman SP, Kaufman S, La DS, Long A, Martin MW, Neervannan S, Patel VF, Potashman M, Regal K, Roveto PM, Schrag ML, Starnes C, Tasker A, Teffera Y, Wang L, White RD, Whittington DA, Zanon R, J Med Chem. 2008 Mar 27;51(6):1649-67. Epub 2008 Mar 7. PMID:18324761

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk] Biological Unit Coordinates (3b8q.pdb1.gz) 50 Kb Biological Unit Coordinates (3b8q.pdb2.gz) 46 Kb LPC: Ligand-Protein Contacts for 3B8Q CSU: Contacts of Structural Units for 3B8Q Likely Quarternary Molecular Structure file(s) for 3B8Q Structure Factors (127 Kb) Retrieve 3B8Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3B8Q from S2C, [Save to disk] Re-refined 3b8q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B8Q in 3D

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Visual 3D analysis of 3B8Q

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3B8Q, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b8q] [3b8q_A] [3b8q_B] SWISS-PROT database: [P35968] Domain organization of [VGFR2_HUMAN] by SWISSPFAM Domain found in 3B8Q: [TyrKc ] by SMART

Other resources with information on 3B8Q

Community annotation for 3B8Q at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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