OCA Atlas for 3B97

3B97

Lyase

date

Nov 02, 2007

title

Crystal Structure Of Human Enolase 1

authors

H.J.Kang, S.K.Jung, S.J.Kim, S.J.Chung

compound

source

Molecule: Alpha-Enolase
Chain: A, B, C, D
Synonym: Enolase 1, 2-Phospho-D-Glycerate Hydro-Lyase, Non- Enolase, Nne, Phosphopyruvate Hydratase, C-Myc Promoter-Bin Protein, Mbp-1, Mpb-1, Plasminogen-Binding Protein;
Ec: 4.2.1.11

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

symmetry

Space Group: P 42

R_factor

0.184

R_Free

0.217

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
192.796	192.796	65.170	90.00	90.00	90.00

method

X-Ray Diffraction

resolution

2.20 Å

ligand

MG, SO4

enzyme

Lyase E.C.4.2.1.11 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B	transcriptional repressor ac...	negative regulation of trans...

Primary reference

Structure of human alpha-enolase (hENO1), a multifunctional glycolytic enzyme., Kang HJ, Jung SK, Kim SJ, Chung SJ, Acta Crystallogr D Biol Crystallogr. 2008 Jun;64(Pt 6):651-7. Epub 2008, May 14. PMID:18560153

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]

Biological Unit Coordinates (3b97.pdb1.gz) 139 Kb

Biological Unit Coordinates (3b97.pdb2.gz) 138 Kb

LPC: Ligand-Protein Contacts for 3B97

CSU: Contacts of Structural Units for 3B97

Likely Quarternary Molecular Structure file(s) for 3B97

Structure Factors (1409 Kb)

Retrieve 3B97 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3B97 from S2C, [Save to disk]

Re-refined 3b97 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3B97 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3B97

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3B97, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3b97] [3b97_D] [3b97_B] [3b97_C] [3b97_A]

SWISS-PROT database: [P06733]

Domain organization of [ENOA_HUMAN] by SWISSPFAM

Domains found in 3B97: [Enolase_C] [Enolase_N ] by SMART

Other resources with information on 3B97

Community annotation for 3B97 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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