3B9C Unknown Function date Nov 05, 2007
title Crystal Structure Of Human Grp Crd
authors D.Zhou, H.H.Ge, L.W.Niu, M.K.Teng
compound source
Molecule: Hspc159
Chain: A, D, C, B
Fragment: Unp Residues 38-172
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28
symmetry Space Group: C 1 2 1
R_factor 0.221 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.140 96.670 61.570 90.00 118.79 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BME, SO4 enzyme
note 3B9C is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the C-terminal conserved domain of human GRP, a galectin-related protein, reveals a function mode different from those of galectins., Zhou D, Ge H, Sun J, Gao Y, Teng M, Niu L, Proteins. 2008 Mar 4;. PMID:18320588
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (3b9c.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (3b9c.pdb2.gz) 48 Kb
  • Biological Unit Coordinates (3b9c.pdb3.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 3B9C
  • CSU: Contacts of Structural Units for 3B9C
  • Likely Quarternary Molecular Structure file(s) for 3B9C
  • Structure Factors (720 Kb)
  • Retrieve 3B9C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3B9C from S2C, [Save to disk]
  • Re-refined 3b9c structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3B9C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3B9C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3B9C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3b9c_B] [3b9c_A] [3b9c] [3b9c_D] [3b9c_C]
  • SWISS-PROT database: [Q3ZCW2]
  • Domain organization of [LEGL_HUMAN] by SWISSPFAM
  • Domains found in 3B9C: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 3B9C
  • Community annotation for 3B9C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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