3BB2 Hormone date Nov 09, 2007
title Crystal Structure Of L26dd28n Mutant Of Human Acidic Fibroblast Growth Factor
authors J.Lee, M.Blaber
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Beta-Endothelial Cell Growth Factor, Ecgf-Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
75.442 96.700 108.071 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand FMT, SO4 enzyme
A, B

Primary referenceA logical OR redundancy within the Asx-Pro-Asx-Gly type I beta-turn motif., Lee J, Dubey VK, Longo LM, Blaber M, J Mol Biol. 2008 Apr 4;377(4):1251-64. Epub 2008 Jan 31. PMID:18308335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (3bb2.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (3bb2.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3BB2
  • CSU: Contacts of Structural Units for 3BB2
  • Likely Quarternary Molecular Structure file(s) for 3BB2
  • Structure Factors (715 Kb)
  • Retrieve 3BB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BB2 from S2C, [Save to disk]
  • Re-refined 3bb2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3BB2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3BB2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BB2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f3bb2, region B:1-79 [Jmol] [rasmolscript] [script source]
        - Domain d1j3bb2, region B:2-211 [Jmol] [rasmolscript] [script source]
        - Domain d1s3bb2, region B:290-401 [Jmol] [rasmolscript] [script source]
        - Domain d1h3bb2, region B:37-307 [Jmol] [rasmolscript] [script source]
        - Domain d1b3bb2, region B:4-178 [Jmol] [rasmolscript] [script source]
  • Fold representative 3bb2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bb2_B] [3bb2_A] [3bb2]
  • SWISS-PROT database: [P05230]
  • Domain organization of [FGF1_HUMAN] by SWISSPFAM
  • Domain found in 3BB2: [FGF ] by SMART
  • Other resources with information on 3BB2
  • Community annotation for 3BB2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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