3BBX Ribosome date Nov 11, 2007
title The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map 50s.Nc-Trna.Hsp15 Complex
authors L.Jiang, J.P.Abrahams
compound source
Molecule: 5s Ribosomal Rna
Chain: A
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 23s Ribosomal Rna
Chain: B
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L25
Chain: V
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L2
Chain: C
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L3
Chain: D
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L4
Chain: E
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L5
Chain: F
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L6
Chain: G
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L9
Chain: H
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L13
Chain: J
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L14
Chain: K
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L15
Chain: L
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L16
Chain: M
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L17
Chain: N
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L18
Chain: O
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L19
Chain: P
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L20
Chain: Q
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L21
Chain: R
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L22
Chain: S
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L23
Chain: T
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L24
Chain: U
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L27
Chain: W
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L29
Chain: X
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L30
Chain: Y
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L31
Chain: Z
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L32
Chain
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L33
Chain: 1
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L34
Chain: 2
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L35
Chain: 3
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600

Molecule: 50s Ribosomal Protein L36
Chain: 4
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre600
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 10.00 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
0


1


2


3


4


C


D


E


F


G


H


J


K


L


M


N


O


P


Q
  • translation repressor activi...


    • R


    S


    T


    U


    V


    W


    X


    Y


    Z


    Primary referenceRecycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15., Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, de Geus DC, Plaisier JR, Abrahams JP, J Mol Biol. 2009 Mar 13;386(5):1357-67. Epub 2008 Nov 5. PMID:19013177
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1601 Kb) [Save to disk]
  • Biological Unit Coordinates (3bbx.pdb1.gz) 1579 Kb
  • LPC: Ligand-Protein Contacts for 3BBX
  • CSU: Contacts of Structural Units for 3BBX
  • Likely Quarternary Molecular Structure file(s) for 3BBX
  • Retrieve 3BBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BBX from S2C, [Save to disk]
    • View 3BBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BBX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3BBX, from MSDmotif at EBI
  • Fold representative 3bbx from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bbx_Y] [3bbx_O] [3bbx_3] [3bbx_P] [3bbx_0] [3bbx_V] [3bbx_4] [3bbx_Z] [3bbx] [3bbx_U] [3bbx_K] [3bbx_N] [3bbx_W] [3bbx_B] [3bbx_C] [3bbx_S] [3bbx_Q] [3bbx_E] [3bbx_X] [3bbx_D] [3bbx_F] [3bbx_J] [3bbx_2] [3bbx_R] [3bbx_H] [3bbx_A] [3bbx_T] [3bbx_G] [3bbx_1] [3bbx_M] [3bbx_L]
  • SWISS-PROT database: [P0AA10] [P0ADY3] [P02413] [P0ADY7] [P0AG44] [P0C018] [P0A7K6] [P0A7L3] [P0AG48] [P61175] [P0ADZ0] [P60624] [P68919] [P0A7L8] [P0A7M6] [P60422] [P0AG51] [P0A7M9] [P0A7N4] [P0A7N9] [P0A7P5] [P0A7Q1] [P0A7Q6] [P60438] [P60723] [P62399] [P0AG55] [P0A7R1]
  • Domain organization of [RL13_ECOLI] [RL14_ECOLI] [RL15_ECOLI] [RL16_ECOLI] [RL17_ECOLI] [RL18_ECOLI] [RL19_ECOLI] [RL20_ECOLI] [RL21_ECOLI] [RL22_ECOLI] [RL23_ECOLI] [RL24_ECOLI] [RL25_ECOLI] [RL27_ECOLI] [RL29_ECOLI] [RL2_ECOLI] [RL30_ECOLI] [RL31_ECOLI] [RL32_ECOLI] [RL33_ECOLI] [RL34_ECOLI] [RL35_ECOLI] [RL36_ECOLI] [RL3_ECOLI] [RL4_ECOLI] [RL5_ECOLI] [RL6_ECOLI] [RL9_ECOLI] by SWISSPFAM
  • Domains found in 3BBX: [KOW] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C ] by SMART
    • Other resources with information on 3BBX
  • Community annotation for 3BBX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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