3BDM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GDT	enzyme
Gene Ontology	Chain Function Process Component B, P proteasome core complex, alp... G, U proteasome core complex, alp... M, 0 proteasome core complex, bet... N, 1 proteasome core complex, bet... O, A proteasome core complex, alp... Q, C R, D proteasome core complex, alp... S, E proteasome core complex, alp... T, F proteasome core complex, alp... V, H, K, Y W, I endopeptidase activator acti... proteasome core complex, bet... X, J endopeptidase activator acti... proteasome core complex, bet... Z, L
Primary reference	A plant pathogen virulence factor inhibits the eukaryotic proteasome by a novel mechanism., Groll M, Schellenberg B, Bachmann AS, Archer CR, Huber R, Powell TK, Lindow S, Kaiser M, Dudler R, Nature. 2008 Apr 10;452(7188):755-8. PMID:18401409

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1019 Kb) [Save to disk] Biological Unit Coordinates (3bdm.pdb1.gz) 1010 Kb LPC: Ligand-Protein Contacts for 3BDM CSU: Contacts of Structural Units for 3BDM Likely Quarternary Molecular Structure file(s) for 3BDM Structure Factors (2263 Kb) Retrieve 3BDM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3BDM from S2C, [Save to disk] Re-refined 3bdm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BDM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bdm] [3bdm_0] [3bdm_1] [3bdm_A] [3bdm_B] [3bdm_C] [3bdm_D] [3bdm_E] [3bdm_F] [3bdm_G] [3bdm_H] [3bdm_I] [3bdm_J] [3bdm_K] [3bdm_L] [3bdm_M] [3bdm_N] [3bdm_O] [3bdm_P] [3bdm_Q] [3bdm_R] [3bdm_S] [3bdm_T] [3bdm_U] [3bdm_V] [3bdm_W] [3bdm_X] [3bdm_Y] [3bdm_Z] SWISS-PROT database: [P40302] [P23639] [P21242] [P23638] [P32379] [P21243] [P40303] [P23724] [P22141] [P25451] [P30657] [P30656] [P38624] [P25043] Domain found in 3BDM: [Proteasome_A_N ] by SMART

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