OCA Atlas for 3BDX

3BDX

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACT, GOL, MES

enzyme

Primary reference

A single mutation at the sheet switch region results in conformational changes favoring lambda6 light-chain fibrillogenesis., Hernandez-Santoyo A, del Pozo Yauner L, Fuentes-Silva D, Ortiz E, Rudino-Pinera E, Sanchez-Lopez R, Horjales E, Becerril B, Rodriguez-Romero A, J Mol Biol. 2010 Feb 19;396(2):280-92. Epub 2009 Nov 24. PMID:19941869

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]

Biological Unit Coordinates (3bdx.pdb1.gz) 53 Kb

Biological Unit Coordinates (3bdx.pdb2.gz) 19 Kb

Biological Unit Coordinates (3bdx.pdb3.gz) 19 Kb

Biological Unit Coordinates (3bdx.pdb4.gz) 19 Kb

LPC: Ligand-Protein Contacts for 3BDX

CSU: Contacts of Structural Units for 3BDX

Likely Quarternary Molecular Structure file(s) for 3BDX

Structure Factors (145 Kb)

Retrieve 3BDX in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3BDX from S2C, [Save to disk]

Re-refined 3bdx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BDX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bdx] [3bdx_A] [3bdx_B] [3bdx_C]

SWISS-PROT database:

Domain found in 3BDX: [IGv ] by SMART

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