OCA Atlas for 3BET

3BET

Lyase

date

Nov 20, 2007

title

Crystal Structure Of The Human Carbonic Anhydrase II In Comp Stx 641 At 1.85 Angstroms Resolution

authors

A.Di Fiore, G.De Simone

compound

source

Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonic Anhydrase II, Carbonate Dehydratase II, C Carbonic Anhydrase C;
Ec: 4.2.1.1

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

symmetry

Space Group: P 1 21 1

R_factor

0.170

R_Free

0.203

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
42.170	41.490	71.580	90.00	104.07	90.00

method

X-Ray Diffraction

resolution

1.85 Å

ligand

CTF, GOL, ZN BindingDB

enzyme

Lyase E.C.4.2.1.1 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Structure-activity relationships of C-17 cyano-substituted estratrienes as anticancer agents., Leese MP, Jourdan FL, Gaukroger K, Mahon MF, Newman SP, Foster PA, Stengel C, Regis-Lydi S, Ferrandis E, Di Fiore A, De Simone G, Supuran CT, Purohit A, Reed MJ, Potter BV, J Med Chem. 2008 Mar 13;51(5):1295-308. Epub 2008 Feb 9. PMID:18260615

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]

Biological Unit Coordinates (3bet.pdb1.gz) 48 Kb

LPC: Ligand-Protein Contacts for 3BET

CSU: Contacts of Structural Units for 3BET

Likely Quarternary Molecular Structure file(s) for 3BET

Structure Factors (273 Kb)

Retrieve 3BET in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3BET from S2C, [Save to disk]

Re-refined 3bet structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3BET in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3BET

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 3BET, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3bet] [3bet_A]

SWISS-PROT database: [P00918]

Domain organization of [CAH2_HUMAN] by SWISSPFAM

Domain found in 3BET: [Carb_anhydrase ] by SMART

Other resources with information on 3BET

Community annotation for 3BET at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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