3BFB Pheromone Binding Protein date Nov 21, 2007
title Crystal Structure Of A Pheromone Binding Protein From Apis M In Complex With The 9-Keto-2(E)-Decenoic Acid
authors M.E.Pesenti, S.Spinelli, V.Bezirard, L.Briand, J.C.Pernollet, M.T C.Cambillau
compound source
Molecule: Pheromone-Binding Protein Asp1
Chain: A
Fragment: Unp Residues 26-144
Engineered: Yes
 Organism_scientific: Apis Mellifera
Organism_common: Honeybee
Expression_system: Pichia Pastoris
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phil-D2
symmetry Space Group: C 2 2 21
R_factor 0.204 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.099 84.281 47.602 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand 9OD, CL, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of the Honey Bee PBP Pheromone and pH-induced Conformational Change., Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Tegoni M, Cambillau C, J Mol Biol. 2008 Apr 27;. PMID:18508083
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3bfb.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (3bfb.pdb2.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 3BFB
  • CSU: Contacts of Structural Units for 3BFB
  • Likely Quarternary Molecular Structure file(s) for 3BFB
  • Structure Factors (454 Kb)
  • Retrieve 3BFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3BFB from S2C, [Save to disk]
  • Re-refined 3bfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3BFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3BFB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3BFB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3bfb_A] [3bfb]
  • SWISS-PROT database: [Q9U9J6]
  • Domain organization of [Q9U9J6_APIME] by SWISSPFAM
  • Domain found in 3BFB: [PhBP ] by SMART
    • Other resources with information on 3BFB
  • Community annotation for 3BFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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